The header files under src/helper/ can currently be included with
either
#include <bits.h>
or
#include <helper/bits.h>
This is because we specify both "src/" and "src/helper/" directories
as include directories. Some files name under "src/helper/", such as
types.h, log.h, and util.h are too generic and could be ambiguous
depending on the search path.
This commit remove "src/helper/" from our include dir and make C files
include explicitly.